species:   Rhsol
pid:       PID0491
parent:    Rhi-milR-112
paralog:   
locus:     KB317708.1:469343-469428
matures:   ['UAUGGCCGUGGAUACUUUGCAA', 'GUGACUUGUAUCCAUCCCAUUAAGC']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317708.1:469343-469428

31291 out of bounds
30032 alignments
51 proper strand
48 stranded perfect matches

        *************************                 ****************************        
UUCGAAGUCCUAUGGCCGUGGAUACUUUGCAAUCCCAAAGUGGGUAUAUAUGUGUGACUUGUAUCCAUCCCAUUAAGCACUUGGAC
.((.((((.((((((..((((((((.(((((..((((...))))........)))))...)))))))).))))..)).)))).)).
----------UAUGGCCGUGGAUACUUUGCAA------------------------------------------------------ l=22 a=2 c
-----------------------------------------------------GUGACUUGUAUCCAUCCCAUUAAGC-------- l=25 a=0 c*
----------UAUGGCCGUGGAUACUUUGCAAU----------------------------------------------------- l=23 a=17 ma
----------------------------------------------------UGUGACUUGUAUCCAUCCCAUUAAGC-------- l=26 a=0 ma*

-------UCCUAUGGCCGUGGAUACUUUGC-------------------------------------------------------- l=23 a=1 
-------UCCUAUGGCCGUGGAUACUUUGCA------------------------------------------------------- l=24 a=2 
---------CUAUGGCCGUGGAUACUUUGCAA------------------------------------------------------ l=23 a=1 
----------UAUGGCCGUGGAUACUUUG--------------------------------------------------------- l=19 a=1 
----------UAUGGCCGUGGAUACUUUGC-------------------------------------------------------- l=20 a=6 
----------UAUGGCCGUGGAUACUUUGCA------------------------------------------------------- l=21 a=1 
----------UAUGGCCGUGGAUACUUUGCAA------------------------------------------------------ l=22 a=2 (c)
----------UAUGGCCGUGGAUACUUUGCAAU----------------------------------------------------- l=23 a=17 (ma)
----------UAUGGCCGUGGAUACUUUGCAAUC---------------------------------------------------- l=24 a=3 
----------UAUGGCCGUGGAUACUUUGCAAUCa--------------------------------------------------- l=25 a=1 
------------UGGCCGUGGAUACUUUGCAAU----------------------------------------------------- l=21 a=4 
------------UGGCCGUGGAUACUUUGCAAUC---------------------------------------------------- l=22 a=7 
------------UGGCCGUGGAUACUUUGCAAUCC--------------------------------------------------- l=23 a=3 
------------UGGCCGUGGAUACUUUGCAAUCa--------------------------------------------------- l=23 a=1 
------------UGGCCGUGGAUACUUUGCAAUCu--------------------------------------------------- l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-111111001100
fn-101
